GSM2534067: ChIP-seq from PC-9 (ENCLB134BRC); Homo sapiens; ChIP-Seq - SRA

SRX2635972: GSM2534067: ChIP-seq from PC-9 (ENCLB134BRC); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 38.5M spots, 5.9G bases, 4Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

show Abstracthide Abstract

Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS177ANS: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

SAMN06464337 • SRS2040021 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Experiment attributes:

GEO Accession: GSM2534067

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 38.5M spots, 5.9G bases, 4Gb

Run	# of Spots	# of Bases	Size	Published
SRR5338855	38,491,590	5.9G	4Gb	2017-03-13

ID:: 3814044

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity